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DB built by FlyBase

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Gene: jvl FBgn0263929

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Description

javelin-like

Gene Synonyms

Location

Primary_assembly 3R: 14,741,582-14,795,868 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 7 transcripts (splice variants) and 10 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
jvl-RD	FBtr0305692	5350	1315aa	FBpp0296972	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K682	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
jvl-RF	FBtr0305694	6493	1151aa	FBpp0296974	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6H8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
jvl-RA	FBtr0305690	6436	1153aa	FBpp0296970	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0IQF1 Q960P5 Q9VFG3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
jvl-RE	FBtr0305693	4993	958aa	FBpp0296973	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NNB4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
jvl-RG	FBtr0305695	4547	1120aa	FBpp0296975	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6X6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
jvl-RC	FBtr0305691	3889	958aa	FBpp0296971	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NNB4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
jvl-RB	FBtr0305689	3237	959aa	FBpp0296969	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSJ6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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