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DB built by FlyBase

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Gene: Pde1c FBgn0264815

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Description

Phosphodiesterase 1c

Gene Synonyms

Location

Primary_assembly 2L: 11,814,156-11,928,572 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 9 transcripts (splice variants) and 30 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pde1c-RE	FBtr0334138	5563	1173aa	FBpp0306255	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZV2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Pde1c-RG	FBtr0334140	5704	834aa	FBpp0306257	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZV4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pde1c-RJ	FBtr0334141	5321	1158aa	FBpp0306258	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDA0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pde1c-RK	FBtr0334142	5071	1009aa	FBpp0306259	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZV3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pde1c-RL	FBtr0344148	4894	855aa	FBpp0310561	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2BZJ7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pde1c-RH	FBtr0334135	4703	952aa	FBpp0306252	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF02	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pde1c-RC	FBtr0334137	4561	605aa	FBpp0306254	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKE9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pde1c-RD	FBtr0334139	4203	1137aa	FBpp0306256	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZV1 Q8SXR0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pde1c-RB	FBtr0334136	3862	834aa	FBpp0306253	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZV4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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