Summary
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DB built by FlyBase

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Gene: PDZ-GEF FBgn0265778

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Description

PDZ domain-containing guanine nucleotide exchange factor

Gene Synonyms

Location

Primary_assembly 2L: 6,323,767-6,332,789 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 86 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
PDZ-GEF-RA	FBtr0079249	6067	1573aa	FBpp0078879	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95V18 Q9VMF3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PDZ-GEF-RD	FBtr0333242	6823	1569aa	FBpp0305443	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z025	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PDZ-GEF-RB	FBtr0300038	5912	1569aa	FBpp0289315	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z025 B8Q6A6 D3DMF4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PDZ-GEF-RC	FBtr0300039	5471	1422aa	FBpp0289316	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z026 B8Q6A8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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