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DB built by FlyBase

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Gene: rg FBgn0266098

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Description

rugose

Gene Synonyms

Location

Primary_assembly X: 5,085,759-5,254,864 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 7 transcripts (splice variants), 77 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
rg-RQ	FBtr0344652	16491	3785aa	FBpp0310999	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JAH8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
rg-RP	FBtr0344651	19353	3446aa	FBpp0310998	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JE60	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rg-RR	FBtr0344668	16076	3239aa	FBpp0311009	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rg-RL	FBtr0344647	15981	3719aa	FBpp0310994	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KHV9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
rg-RN	FBtr0344649	15534	3466aa	FBpp0310996	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEW6 Q6IIN7 Q9W4E2	-	-
rg-RM	FBtr0344648	14745	3203aa	FBpp0310995	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0W8 Q6IIN6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rg-RO	FBtr0344650	11424	3400aa	FBpp0310997	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0X3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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