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DB built by FlyBase

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Gene: Girdin FBgn0283724

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Description

Girdin

Gene Synonyms

Location

Primary_assembly 3L: 3,178,930-3,185,287 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 5 transcripts (splice variants), 75 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Girdin-RA	FBtr0073035	5190	1381aa	FBpp0072899	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VZT7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Girdin-RC	FBtr0332097	5187	1380aa	FBpp0304407	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDY5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Girdin-RD	FBtr0332098	5150	1236aa	FBpp0304408	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEG0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Girdin-RB	FBtr0073036	5147	1235aa	FBpp0072900	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SX64	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Girdin-RE	FBtr0332099	5085	1346aa	FBpp0304409	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PE55	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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