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Summary
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DB built by FlyBase

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Gene: Sema5c FBgn0284221

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Description

Semaphorin 5c

Gene Synonyms

Location

Primary_assembly 3L: 12,067,511-12,081,830 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 73 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Sema5c-RA	FBtr0076052	4385	1093aa	FBpp0075784	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTT0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Sema5c-RB	FBtr0300339	4112	1091aa	FBpp0289568	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YU67 Q9U631	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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