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- Splice variants
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DB built by FlyBase

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Gene: Gfat1 FBgn0287209

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Description

Glutamine:fructose-6-phosphate aminotransferase 1

Gene Synonyms

Location

Primary_assembly 3R: 4,126,442-4,137,882 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 9 transcripts (splice variants), 77 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Gfat1-RN	FBtr0302850	2628	694aa	FBpp0291990	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q32KF3 Q7PLC7 Q9Y093	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Gfat1-RK	FBtr0302847	3726	493aa	FBpp0291987	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7PLC5	-	-
Gfat1-RH	FBtr0113694	2601	685aa	FBpp0112417	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y596	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Gfat1-RJ	FBtr0302846	2538	643aa	FBpp0291986	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHS9	-	-
Gfat1-RA	FBtr0113687	2426	694aa	FBpp0112410	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7PLC7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Gfat1-RL	FBtr0302848	2390	682aa	FBpp0291988	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y599	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Gfat1-RD	FBtr0113692	2363	673aa	FBpp0112415	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7PLC6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Gfat1-RM	FBtr0302849	2339	665aa	FBpp0291989	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y5A0	-	-
Gfat1-RF	FBtr0113690	2290	434aa	FBpp0112413	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y5A1	-	-

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Summary

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