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DB built by FlyBase

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Gene: Obp56e FBgn0034471

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Description

Odorant-binding protein 56e

Gene Synonyms

Location

Primary_assembly 2R: 19,712,345-19,712,932 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 2 transcripts (splice variants), 38 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Obp56e-RA	FBtr0086327	532	132aa	FBpp0085634	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9QHS4 A9QHS6 A9QHW8 Q7K088	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Obp56e-RB	FBtr0340600	529	131aa	FBpp0309474	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFW3 A9QHT4 C0PV28	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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