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Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: Spf45 FBgn0086683

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Description

Spf45

Gene Synonyms

Location

Primary_assembly 2L: 23,066,874-23,068,386 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 3 transcripts (splice variants) and 72 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Spf45-RA	FBtr0111239	1397	403aa	FBpp0110561	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NL39 Q7PL83 Q8SYI1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Spf45-RB	FBtr0111240	1354	371aa	FBpp0110573	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7PL81	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Spf45-RC	FBtr0111241	1257	363aa	FBpp0110506	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7PL82	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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