Stegodyphus mimosarum (Stegodyphus_mimosarum_v1)

Stegodyphus mimosarum Assembly and Gene Annotation

About Stegodyphus mimosarum

Stegodyphus mimosarum is commonly known as the African social velvet spider. Social spiders live in large, communal webs, in which they feed communally and cooperate in prey capture, web maintenance and brood care. Social spiders are highly inbred due to within-colony breeding and a lack of a pre-mating dispersal stage, they are therefore a perfect system to study inbreeding effects in wild animal populations.

(Text from Spiderlab, Aarhus University.)

Picture copyright: Virginia Settepani

Assembly

The assembly presented is the Stegodyphus_mimosarum_v1 assembly submitted to INSDC with the assembly accession GCA_000611955.2.

Annotation

Ensembl Metazoa displays the gene set associated with the study PRJNA222714. Genes were annotated by combining transcriptomic data with de novo prediction and proteomic methods [1]. Protein features and cross-references have been computed by Ensembl Metazoa.

References

  1. Spider genomes provide insight into composition and evolution of venom and silk.
    Sanggaard KW, Bechsgaard JS, Fang X, Duan J, Dyrlund TF, Gupta V, Jiang X, Cheng L, Fan D, Feng Y et al. 2014. Nature Communications. 5:3765.

Statistics

Summary

AssemblyStegodyphus_mimosarum_v1, INSDC Assembly GCA_000611955.2, Sep 2014
Database version100.2
Base Pairs2,694,162,817
Golden Path Length2,738,704,917
Genebuild bySpiderlab
Genebuild methodImport
Data sourceSpiderlab, Aarhus University

Gene counts

Coding genes27,135
Non coding genes2,038
Small non coding genes2,037
Long non coding genes1
Pseudogenes117
Gene transcripts29,290

About this species