Description

Synapse-associated protein [Source:VB External Description;Acc:AGAP004273]

Location
About this transcript

This transcript has 10 exons, is annotated with 16 domains and features, is associated with 20 variations and maps to 25 oligo probes.

Gene

This transcript is a product of gene AGAP004273 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
NovelAGAP004273-RD1828518aaAGAP004273-PD
 
Protein coding
F5HL80 XM_003436719.1
XP_003436767.1
NovelAGAP004273-RC1612513aaAGAP004273-PC
 
Protein coding
F5HL81 XM_003436720.1
XP_003436768.1
NovelAGAP004273-RA1538471aaAGAP004273-PA
 
Protein coding
F5HL82 Q7PQP1 XM_313195.5
XP_313195.5
NovelAGAP004273-RB1481357aaAGAP004273-PB
 
Protein coding
F5HL82 XM_003436721.1
XP_003436769.1
Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,828 bps, Translation length: 518 residues

Version

AGAP004273-RD.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays