Description

40S ribosomal protein S5 [Source:VB Community Annotation;Acc:AGAP008329]

Location
About this transcript

This transcript has 5 exons, is annotated with 13 domains and features, is associated with 7 variations and maps to 54 oligo probes.

Gene

This transcript is a product of gene AGAP008329 Show transcript tableHide transcript table

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
RpS5AGAP008329-RC1469233aaAGAP008329-PC
 
Protein coding
A0NF04 XM_555129.2
XP_555129.1
RpS5AGAP008329-RB1457233aaAGAP008329-PB
 
Protein coding
A0NF04 XM_555129.2
XP_555129.1
RpS5AGAP008329-RA1165233aaAGAP008329-PA
 
Protein coding
A0NF04 XM_555129.2
XP_555129.1
Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,165 bps, Translation length: 233 residues

Version

AGAP008329-RA.

Type

Known protein coding

Annotation Method

Genes were annotated by merging Ensembl and TIGR prediction sets. The Ensembl automatic analysis pipeline used either a GeneWise/Exonerate model from a known protein or a set of aligned cDNAs/ESTs followed by an ORF prediction. GeneWise/Exonerate models are further combined with available aligned cDNAs/ESTs to annotate UTRs (for more information see V.Curwen et al., Genome Res. 2004 14:942-50). TIGR annotations were based on Augustus (M. Stanke), GlimmerHMM (M. Pertea), Genie (D. Kulp), and Twinscan (M. Brent) gene predictions, coupled with protein and EST genome alignments.

Transcript-based displays