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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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DB built by WormBase

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Gene: cal-4 WBGene00000288

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Description

CALmodulin relateds [Source:NCBI gene;Acc:177945]

Location

Chromosome IV: 10,521,406-10,530,598 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 4 transcripts (splice variants), 1014 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	T07G12.1a.1	1488	236aa	T07G12.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EDZ8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	T07G12.1b.1	1101	208aa	T07G12.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EF93	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	T07G12.1b.2	1031	208aa	T07G12.1b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EF93	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	T07G12.1c.1	549	182aa	T07G12.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O18058	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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