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DB built by WormBase

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Gene: ifa-1 WBGene00002050

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Description

Intermediate filament protein ifa-1 [Source:NCBI gene;Acc:181316]

Location

Chromosome X: 11,271,182-11,275,498 forward strand.

WBcel235:BX284606.5

About this gene

This gene has 5 transcripts (splice variants), 94 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F38B2.1e.1	1954	604aa	F38B2.1e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IIR6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	F38B2.1b.1	1976	575aa	F38B2.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P90901	-	-
-	F38B2.1a.1	1949	575aa	F38B2.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P90901	-	-
-	F38B2.1c.1	1848	567aa	F38B2.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P90901	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
-	F38B2.1d.1	1779	592aa	F38B2.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P90901	-	-

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Summary

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