Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: vhp-1 WBGene00006923

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Description

Protein-tyrosine-phosphatase; Tyrosine-protein phosphatase vhp-1 [Source:NCBI gene;Acc:173904]

Location

Chromosome II: 5,323,276-5,340,829 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 8 transcripts (splice variants), 52 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F08B1.1e.1	1986	661aa	F08B1.1e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2C9C380	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F08B1.1b.1	2611	606aa	F08B1.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q10038	-	-
-	F08B1.1a.1	2559	657aa	F08B1.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q10038	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F08B1.1a.2	2169	657aa	F08B1.1a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q10038	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F08B1.1d.1	1761	586aa	F08B1.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2C9C2Y5	-	-
-	F08B1.1f.1	1509	502aa	F08B1.1f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2C9C318	-	-
-	F08B1.1g.1	1347	448aa	F08B1.1g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2C9C3G0	-	-
-	F08B1.1c	1577	No protein	-	A non-coding gene.ncRNA	-	-	-

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Summary

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