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Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by WormBase

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Gene: wdfy-3 WBGene00007752

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Description

WD40 and FYVE domain protein [Source:NCBI gene;Acc:178220]

Location

Chromosome IV: 12,653,401-12,674,769 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 4 transcripts (splice variants), 30 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C26H9A.2c.1	10537	3358aa	C26H9A.2c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2FLM3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
-	C26H9A.2a.1	10530	3354aa	C26H9A.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EFJ7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C26H9A.2b.1	10511	3356aa	C26H9A.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2FLM2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C26H9A.2d.1	10071	3356aa	C26H9A.2d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2FLM1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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