Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
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DB built by WormBase

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Gene: F39D8.3 WBGene00009561

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Description

Uncharacterized protein [Source:NCBI gene;Acc:181632]

Location

Chromosome X: 15,420,971-15,425,115 forward strand.

WBcel235:BX284606.5

About this gene

This gene has 5 transcripts (splice variants), 1 orthologue and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F39D8.3b.1	1212	403aa	F39D8.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K8ES61	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F39D8.3a.1	1620	362aa	F39D8.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q20190	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F39D8.3a.2	1428	362aa	F39D8.3a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q20190	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F39D8.3d.1	201	66aa	F39D8.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K8ERP4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F39D8.3c.1	129	42aa	F39D8.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K8FDX8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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