Summary
- Splice variants
- Transcript comparison
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Pan-taxonomic Compara
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- GO: Cellular component
- GO: Biological process
- GO: Molecular function
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Genetic Variation
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DB built by WormBase

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Gene: T28D6.5 WBGene00012125

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Description

Uncharacterized protein [Source:NCBI gene;Acc:176564]

Location

Chromosome III: 11,333,682-11,342,247 forward strand.

WBcel235:BX284603.4

About this gene

This gene has 7 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	T28D6.5f.1	3914	824aa	T28D6.5f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I2HAF0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	T28D6.5g.1	2925	790aa	T28D6.5g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I2HAF1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	T28D6.5b.1	2743	802aa	T28D6.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5ECY9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	T28D6.5a.1	2583	718aa	T28D6.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EFU5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	T28D6.5e.1	2550	703aa	T28D6.5e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I2HAE7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	T28D6.5c.1	2420	768aa	T28D6.5c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I2HAE8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	T28D6.5d.1	2214	737aa	T28D6.5d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I2HAE9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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