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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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- Structural variants
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DB built by WormBase

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Gene: mgl-3 WBGene00021152

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Description

G_PROTEIN_RECEP_F3_4 domain-containing protein [Source:NCBI gene;Acc:177327]

Location

Chromosome IV: 5,439,005-5,450,802 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 9 transcripts (splice variants), 83 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y4C6A.2d.1	3250	1008aa	Y4C6A.2d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1IMB8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y4C6A.2a.1	3247	1006aa	Y4C6A.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MXU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y4C6A.2e.1	1797	598aa	Y4C6A.2e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AV56	-	-
-	Y4C6A.2f.1	1791	596aa	Y4C6A.2f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AXG3	-	-
-	Y4C6A.2g.1	1203	400aa	Y4C6A.2g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AS42	-	-
-	Y4C6A.2h.1	1197	398aa	Y4C6A.2h.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AUI1	-	-
-	Y4C6A.2b	3169	No protein	-	A non-coding gene.ncRNA	-	-	-
-	Y4C6A.2i	2947	No protein	-	A non-coding gene.ncRNA	-	-	-
-	Y4C6A.2c	2938	No protein	-	A non-coding gene.ncRNA	-	-	-

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Summary

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