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Summary
- Splice variants
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DB built by WormBase

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Gene: Y38F2AR.3 WBGene00021421

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Description

Uncharacterized protein [Source:NCBI gene;Acc:177026]

Location

Chromosome IV: 2,384,013-2,388,089 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 4 transcripts (splice variants) and 58 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y38F2AR.3b.1	1043	288aa	Y38F2AR.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I2HAE1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y38F2AR.3a.1	1022	281aa	Y38F2AR.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95XS3	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	Y38F2AR.3d.1	600	199aa	Y38F2AR.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PF08	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y38F2AR.3c.1	579	192aa	Y38F2AR.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PRW2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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