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DB built by WormBase

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Gene: madf-1 WBGene00021942

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Description

MADF domain-containing protein [Source:NCBI gene;Acc:190316]

Location

Chromosome IV: 830,358-831,896 reverse strand.

WBcel235:BX284604.4

About this gene

This gene has 3 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y55F3BR.5a.1	804	256aa	Y55F3BR.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9N352	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y55F3BR.5b.1	761	242aa	Y55F3BR.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PBX0	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	Y55F3BR.5c.1	342	113aa	Y55F3BR.5c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U4PMC7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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