Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
- Variant image
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ID History
- Gene history

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Gene: gar-1 WBGene00001517

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Description

G_PROTEIN_RECEP_F1_2 domain-containing protein; putative muscarinic acetylcholine receptor gar-1 [Source:NCBI gene;Acc:180922]

Location

Chromosome X: 6,479,443-6,484,880 reverse strand.

WBcel235:BX284606.5

About this gene

This gene has 5 transcripts (splice variants), 90 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C15B12.5b.1	2405	713aa	C15B12.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18007	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C15B12.5a.1	2244	682aa	C15B12.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18007	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	C15B12.5d.1	2133	710aa	C15B12.5d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IIV3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C15B12.5c.1	2060	622aa	C15B12.5c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18007	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C15B12.5e.1	2040	679aa	C15B12.5e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0ILB0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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