Summary
- Splice variants
- Transcript comparison
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Sequence
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Literature
Metazoan Compara
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- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
- Variant table
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DB built by WormBase

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Gene: nfi-1 WBGene00003592

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Description

Nuclear factor I family protein [Source:NCBI gene;Acc:174225]

Location

Chromosome II: 7,538,180-7,543,007 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 5 transcripts (splice variants) and 75 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	ZK1290.4b.3	3179	787aa	ZK1290.4b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5H9N3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK1290.4b.2	3090	787aa	ZK1290.4b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5H9N3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK1290.4b.1	3023	787aa	ZK1290.4b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5H9N3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK1290.4a.1	2993	807aa	ZK1290.4a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5H9N3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZK1290.4c.1	2472	823aa	ZK1290.4c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5H9N3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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