Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Anatomical entity
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Genetic Variation
- Variant table
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DB built by WormBase

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Gene: nhr-21 WBGene00003620

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Description

NR LBD domain-containing protein [Source:NCBI gene;Acc:174202]

Location

Chromosome II: 7,339,229-7,349,133 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 8 transcripts (splice variants), 384 orthologues and 189 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F21D12.1e.1	1534	450aa	F21D12.1e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F21D12.1c.3	3118	440aa	F21D12.1c.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1b.1	2059	400aa	F21D12.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EBL9	-	-
-	F21D12.1c.4	1559	440aa	F21D12.1c.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1c.1	1536	440aa	F21D12.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1a.1	1508	448aa	F21D12.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1d.1	1495	446aa	F21D12.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1c.2	1480	440aa	F21D12.1c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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