Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: nhr-21 WBGene00003620

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Description

NR LBD domain-containing protein [Source:NCBI gene;Acc:174202]

Location

Chromosome II: 7,339,229-7,349,133 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 8 transcripts (splice variants), 345 orthologues and 189 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F21D12.1c.3	3118	440aa	F21D12.1c.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1b.1	2059	400aa	F21D12.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EBL9	-	-
-	F21D12.1c.4	1559	440aa	F21D12.1c.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1c.1	1536	440aa	F21D12.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1e.1	1534	450aa	F21D12.1e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F21D12.1a.1	1508	448aa	F21D12.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1d.1	1495	446aa	F21D12.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F21D12.1c.2	1480	440aa	F21D12.1c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZU2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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