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DB built by WormBase

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Gene: syg-1 WBGene00006365

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Description

Synaptosis protein syg-1 [Source:NCBI gene;Acc:180555]

Location

Chromosome X: 2,509,313-2,515,324 reverse strand.

WBcel235:BX284606.5

About this gene

This gene has 3 transcripts (splice variants), 113 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	K02E10.8b.1	2613	730aa	K02E10.8b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1Q236	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	K02E10.8c.1	2601	727aa	K02E10.8c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IKN9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	K02E10.8a.1	2544	703aa	K02E10.8a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1Q236	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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