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DB built by WormBase

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Gene: obr-1 WBGene00012930

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Description

Oxysterol-binding protein [Source:NCBI gene;Acc:176555]

Location

Chromosome III: 11,257,300-11,270,895 reverse strand.

WBcel235:BX284603.4

About this gene

This gene has 8 transcripts (splice variants), 74 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y47D3A.17c.1	2529	842aa	Y47D3A.17c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7DTF2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	Y47D3A.17b.2	2754	627aa	Y47D3A.17b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95Q23	-	-
-	Y47D3A.17a.1	2552	766aa	Y47D3A.17a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U2C7	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	Y47D3A.17b.1	2322	627aa	Y47D3A.17b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95Q23	-	-
-	Y47D3A.17b.3	2221	627aa	Y47D3A.17b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95Q23	-	-
-	Y47D3A.17e.1	2199	732aa	Y47D3A.17e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G2HK04	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y47D3A.17b.4	1949	627aa	Y47D3A.17b.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95Q23	-	-
-	Y47D3A.17d.1	1552	449aa	Y47D3A.17d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7DTF3	-	-

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Summary

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