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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by WormBase

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Gene: met-1 WBGene00016603

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Description

Histone-lysine N-methyltransferase [Source:NCBI gene;Acc:172026]

Location

Chromosome I: 4,254,197-4,264,699 forward strand.

WBcel235:BX284601.5

About this gene

This gene has 4 transcripts (splice variants), 640 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C43E11.3a.1	5395	1604aa	C43E11.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4LBC2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	C43E11.3b.1	5362	1590aa	C43E11.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4LBC3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C43E11.3b.2	5344	1590aa	C43E11.3b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4LBC3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C43E11.3b.3	5147	1590aa	C43E11.3b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4LBC3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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