Transcript: C40H5.5b.1

Description

LIM/homeobox protein ttx-3 [Source:NCBI gene;Acc:181357]

Location

About this transcript

This transcript has 9 exons and is annotated with 24 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C40H5.5a.1	1441	409aa	C40H5.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EE86	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	C40H5.5b.1	1146	381aa	C40H5.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EE86	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,146 bps, Translation length: 381 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: G5EE86

Version

C40H5.5b.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase