Transcript: F42G9.1b.1

Description

Protein phosphatase ppm-1.G [Source:NCBI gene;Acc:175233]

Location

About this transcript

This transcript has 4 exons and is annotated with 17 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F42G9.1a.1	1954	491aa	F42G9.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P49595	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F42G9.1b.1	2005	469aa	F42G9.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P49595	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,005 bps, Translation length: 469 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P49595

Version

F42G9.1b.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase