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DB built by FlyBase

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Gene: Plod FBgn0036147

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Description

procollagen lysyl hydroxylase

Gene Synonyms

Location

Primary_assembly 3L: 11,198,166-11,206,016 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 88 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
Plod-RA	FBtr0076187	2630	721aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTH0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Plod-RB	FBtr0076188	2544	721aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WEM2 Q9VTH0	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Metazoan Compara

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data