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DB built by FlyBase

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Gene: CG12531 FBgn0031064

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Location

Primary_assembly X: 19,718,923-19,730,199 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 2 transcripts (splice variants), 105 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
CG12531-RA	FBtr0074788	6764	812aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VWD3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG12531-RB	FBtr0335043	6761	811aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G7H832 M9PHM0	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Metazoan Compara

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data