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DB built by FlyBase

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Gene: EcR FBgn0000546

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Description

Ecdysone receptor

Gene Synonyms

Location

Primary_assembly 2R: 6,087,873-6,169,087 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 6 transcripts (splice variants), 248 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
EcR-RG	FBtr0302439	8415	878aa	FBpp0291631	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGY2 P34021	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
EcR-RE	FBtr0086010	5233	849aa	FBpp0085351	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4UZ51	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
EcR-RA	FBtr0086008	5108	849aa	FBpp0085349	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4UZ51	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
EcR-RC	FBtr0086012	4984	669aa	FBpp0085353	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
EcR-RB	FBtr0086011	4092	878aa	FBpp0085352	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGY2 P34021	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
EcR-RD	FBtr0086009	3740	849aa	FBpp0085350	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4UZ51	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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