Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: Ca-alpha1D FBgn0001991

.

Description

Ca[2+]-channel protein alpha[[1]] subunit D

Gene Synonyms

Location

Primary_assembly 2L: 16,165,831-16,190,540 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 10 transcripts (splice variants), 92 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Ca-alpha1D-RM	FBtr0479786	8986	2705aa	FBpp0428119	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Ca-alpha1D-RK	FBtr0479784	9425	2669aa	FBpp0428117	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24270	-	-
Ca-alpha1D-RN	FBtr0479787	9298	2453aa	FBpp0428120	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Ca-alpha1D-RL	FBtr0479785	8973	2672aa	FBpp0428118	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Ca-alpha1D-RO	FBtr0479788	8968	2699aa	FBpp0428121	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDI1	-	-
Ca-alpha1D-RJ	FBtr0332025	8450	2059aa	FBpp0304341	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDI5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Ca-alpha1D-RG	FBtr0332022	8226	1799aa	FBpp0304338	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFZ4	-	-
Ca-alpha1D-RI	FBtr0332024	7890	2026aa	FBpp0304340	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PD04	-	-
Ca-alpha1D-RF	FBtr0332021	7881	2023aa	FBpp0304337	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PD78	-	-
Ca-alpha1D-RH	FBtr0332023	7881	2023aa	FBpp0304339	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBC0	-	-

.

Summary

.

.