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DB built by FlyBase

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Gene: otu FBgn0003023

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Description

ovarian tumor

Gene Synonyms

Location

Primary_assembly X: 8,485,008-8,489,535 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 22 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
otu-RC	FBtr0071238	3241	853aa	FBpp0089325	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P10383	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
otu-RB	FBtr0071237	3227	853aa	FBpp0071181	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G4LU07 P10383	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
otu-RE	FBtr0333147	3118	811aa	FBpp0305352	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H5V8A9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
otu-RA	FBtr0071236	3101	811aa	FBpp0071180	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H5V8A9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
otu-RD	FBtr0333146	3006	811aa	FBpp0305351	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H5V8A9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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