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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
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- Gene tree (Drosophilidae)
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: nmd FBgn0005322

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Description

no mitochondrial derivative

Gene Synonyms

Location

Primary_assembly 2L: 10,302,173-10,303,947 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 3 transcripts (splice variants), 70 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nmd-RC	FBtr0343612	1719	369aa	FBpp0310207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VL02	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
nmd-RA	FBtr0080065	1300	369aa	FBpp0079654	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VL02	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
nmd-RB	FBtr0343611	1172	289aa	FBpp0310206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J7P4	-	-

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Summary

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