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DB built by FlyBase

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Gene: simj FBgn0010762

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Description

simjang

Gene Synonyms

Location

Primary_assembly 3L: 10,664,739-10,690,734 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 5 transcripts (splice variants) and 67 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
simj-RE	FBtr0331574	5110	937aa	FBpp0303964	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PF79	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
simj-RD	FBtr0331573	3640	924aa	FBpp0303963	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PET3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
simj-RA	FBtr0076263	3616	916aa	FBpp0075992	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8G1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
simj-RC	FBtr0076264	3604	912aa	FBpp0075993	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q960V1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
simj-RB	FBtr0076262	3375	916aa	FBpp0075991	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8G1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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