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DB built by FlyBase

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Gene: Fak FBgn0020440

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Description

Focal adhesion kinase

Gene Synonyms

Location

Primary_assembly 2R: 19,430,659-19,437,259 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 6 transcripts (splice variants), 71 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Fak-RD	FBtr0114605	5613	1500aa	FBpp0113097	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZL9 Q2TGI0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Fak-RA	FBtr0086542	4713	1200aa	FBpp0085726	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E917	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Fak-RF	FBtr0301882	4707	1198aa	FBpp0291096	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGM8 Q9U5Y2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Fak-RB	FBtr0086543	4499	1200aa	FBpp0085727	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E917	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Fak-RC	FBtr0086544	4240	1200aa	FBpp0085728	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A418 Q0E917 Q5BIG9 Q9U472 Q9U531	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Fak-RG	FBtr0301883	4142	1200aa	FBpp0291097	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E917	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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