Summary
- Splice variants
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DB built by FlyBase

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Gene: stan FBgn0024836

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Description

starry night

Gene Synonyms

Location

Primary_assembly 2R: 10,673,345-10,721,138 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 7 transcripts (splice variants), 85 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
stan-RF	FBtr0330601	12891	3648aa	FBpp0303451	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KER2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
stan-RG	FBtr0339463	12963	3603aa	FBpp0308549	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LG27	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
stan-RD	FBtr0304899	12898	3574aa	FBpp0293438	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH30	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
stan-RC	FBtr0303223	12891	3579aa	FBpp0292315	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD63 Q9V5N8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
stan-RB	FBtr0300578	12646	3574aa	FBpp0289805	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH30	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
stan-RA	FBtr0088214	12639	3579aa	FBpp0087309	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD63 Q9V5N8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
stan-RE	FBtr0304900	11722	3578aa	FBpp0293439	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6X2 C8VV11	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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