Summary
- Splice variants
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DB built by FlyBase

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Gene: Lint-1 FBgn0030274

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Description

l(3)mbt interacting protein 1

Gene Synonyms

Location

Primary_assembly X: 11,149,323-11,152,592 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants) and 35 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Lint-1-RE	FBtr0343038	2412	602aa	FBpp0309787	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95S76 Q9VZ22	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Lint-1-RD	FBtr0331741	2535	540aa	FBpp0304130	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6SV09	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lint-1-RC	FBtr0331740	2445	540aa	FBpp0304129	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6SV09	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lint-1-RA	FBtr0073440	2291	602aa	FBpp0073296	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VZ22	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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