Summary
- Splice variants
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DB built by FlyBase

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Gene: CG10353 FBgn0030349

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Location

Primary_assembly X: 11,877,737-11,887,162 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 7 transcripts (splice variants), 24 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG10353-RD	FBtr0114452	4774	1029aa	FBpp0112944	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q76NS2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG10353-RI	FBtr0331594	4771	984aa	FBpp0303984	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VYS8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG10353-RE	FBtr0308070	4569	1029aa	FBpp0300413	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q76NS2	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG10353-RF	FBtr0331591	4492	1029aa	FBpp0303981	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3PFF9 Q76NS2	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG10353-RK	FBtr0344702	4482	1000aa	FBpp0311035	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJJ8 Q8MT62	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG10353-RL	FBtr0344703	4290	1013aa	FBpp0311036	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGX9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG10353-RC	FBtr0114451	4203	984aa	FBpp0112943	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VYS8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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