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DB built by FlyBase

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Gene: RhoGAP16F FBgn0030893

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Description

Rho GTPase activating protein at 16F

Gene Synonyms

Location

Primary_assembly X: 18,093,145-18,097,413 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 5 transcripts (splice variants) and 77 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
RhoGAP16F-RE	FBtr0343309	2256	581aa	FBpp0309969	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JCF3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
RhoGAP16F-RF	FBtr0343310	3098	493aa	FBpp0309970	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VWY8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RhoGAP16F-RB	FBtr0074513	2623	493aa	FBpp0074287	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VWY8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RhoGAP16F-RD	FBtr0307201	2424	493aa	FBpp0298030	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9UND9 Q960F5 Q9VWY8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RhoGAP16F-RC	FBtr0307200	2363	493aa	FBpp0298029	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VWY8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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