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DB built by FlyBase

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Gene: hydra FBgn0031128

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Description

hydra

Gene Synonyms

Location

Primary_assembly X: 20,670,832-20,677,063 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 8 transcripts (splice variants) and 20 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
hydra-RA	FBtr0077294	1598	302aa	FBpp0076986	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0RNF6 Q8IQ35 Q8T8X3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
hydra-RF	FBtr0304575	1476	302aa	FBpp0293117	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQ35	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
hydra-RH	FBtr0304577	1475	302aa	FBpp0293119	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRB5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
hydra-RG	FBtr0304576	1474	302aa	FBpp0293118	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRB5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
hydra-RI	FBtr0304578	1465	302aa	FBpp0293120	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRB5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
hydra-RJ	FBtr0343572	1459	302aa	FBpp0310172	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQ35	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
hydra-RD	FBtr0304574	1458	302aa	FBpp0293116	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRB5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
hydra-RB	FBtr0077295	1440	302aa	FBpp0076987	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5YWF7 A5YWF9 A5YWG2 A5YWG5 A5YWG7 F3YDA7 Q9VRB5	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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