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DB built by FlyBase

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Gene: Cp110 FBgn0031191

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Description

Centriolar coiled coil protein 110kDa

Gene Synonyms

Location

Primary_assembly X: 22,482,082-22,487,458 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 8 transcripts (splice variants) and 35 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Cp110-RD	FBtr0100651	2649	666aa	FBpp0100112	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PDW6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Cp110-RE	FBtr0100652	2919	549aa	FBpp0100113	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q45EX1 Q9VR58	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cp110-RA	FBtr0077353	2777	549aa	FBpp0077045	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR58	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cp110-RG	FBtr0339500	2650	549aa	FBpp0308584	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR58	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cp110-RB	FBtr0077352	2630	666aa	FBpp0077044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PDW6	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Cp110-RC	FBtr0100650	2487	549aa	FBpp0100111	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR58	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cp110-RH	FBtr0339501	2320	666aa	FBpp0308585	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PDW6 Q45EX2	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Cp110-RF	FBtr0310475	2292	550aa	FBpp0302623	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAK4 M9PI43	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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