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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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- GO: Molecular function
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DB built by FlyBase

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Gene: ssp3 FBgn0032723

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Description

short spindle 3

Gene Synonyms

Location

Primary_assembly 2L: 18,916,347-18,943,960 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 2 transcripts (splice variants) and 76 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ssp3-RA	FBtr0081193	6146	1732aa	FBpp0080734	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VJ35	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ssp3-RB	FBtr0342929	6318	1730aa	FBpp0309712	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J6U8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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