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Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: CG4853 FBgn0034230

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Location

Primary_assembly 2R: 17,514,217-17,517,445 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 3 transcripts (splice variants), 63 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4853-RB	FBtr0086939	2992	709aa	FBpp0086095	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAU6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG4853-RA	FBtr0086938	2829	709aa	FBpp0086094	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAU6 Q86PC5 Q95S44	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG4853-RC	FBtr0340216	2814	704aa	FBpp0309191	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFJ8	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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