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Summary
- Splice variants
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DB built by FlyBase

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Gene: CG12104 FBgn0035238

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Gene Synonyms

Location

Primary_assembly 3L: 1,600,726-1,602,674 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 43 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12104-RB	FBtr0333360	1398	250aa	FBpp0305552	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0D2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG12104-RA	FBtr0072825	1182	250aa	FBpp0072705	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0D2	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG12104-RC	FBtr0344803	1029	226aa	FBpp0311128	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JG46	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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