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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: CG11560 FBgn0036249

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Gene Synonyms

Location

Primary_assembly 3L: 12,120,019-12,121,185 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 35 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG11560-RB	FBtr0347572	1113	307aa	FBpp0312603	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0WNE9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG11560-RA	FBtr0075993	1101	303aa	FBpp0075725	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6IDV8 Q8T004 Q9VTT4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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