Summary
- Splice variants
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DB built by FlyBase

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Gene: CG10089 FBgn0036369

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Gene Synonyms

Location

Primary_assembly 3L: 13,465,552-13,474,787 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 6 transcripts (splice variants), 67 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG10089-RE	FBtr0331535	3283	447aa	FBpp0303925	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PI51	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG10089-RF	FBtr0345364	2289	447aa	FBpp0311518	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VU80	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG10089-RD	FBtr0075820	2045	447aa	FBpp0075562	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VU80	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG10089-RA	FBtr0075822	1569	327aa	FBpp0075564	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQK1	-	-
CG10089-RB	FBtr0075821	1518	327aa	FBpp0075563	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQK1	-	-
CG10089-RC	FBtr0075823	1070	327aa	FBpp0075565	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQK0	-	-

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Summary

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