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DB built by FlyBase

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Gene: eIF2A FBgn0037135

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Description

eukaryotic translation initiation factor 2A

Gene Synonyms

Location

Primary_assembly 3L: 21,824,740-21,827,856 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 4 transcripts (splice variants) and 80 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
eIF2A-RA	FBtr0078441	2544	638aa	FBpp0078095	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z098 Q9VNX8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
eIF2A-RC	FBtr0303245	2827	555aa	FBpp0292337	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS45	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
eIF2A-RE	FBtr0303247	2602	555aa	FBpp0292339	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS45	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
eIF2A-RD	FBtr0303246	2319	638aa	FBpp0292338	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z098 Q9VNX8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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