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DB built by FlyBase

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Gene: Prp39 FBgn0039600

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Description

pre-mRNA processing factor 39

Gene Synonyms

Location

Primary_assembly 3R: 28,812,102-28,817,354 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 62 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Prp39-RB	FBtr0085322	3405	1066aa	FBpp0084691	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C8VV03 Q7KRW8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Prp39-RH	FBtr0113301	4604	501aa	FBpp0112213	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Prp39-RE	FBtr0113299	3582	1009aa	FBpp0112211	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Prp39-RC	FBtr0085325	3573	1009aa	FBpp0084694	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Prp39-RA	FBtr0085323	3563	1009aa	FBpp0084692	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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